Shi Group Reviews, Chapters and Editorials

 

  1. Sendinc, E and Shi, Y. RNA m6A methylation across the transcriptome. Mol. Cell, 2023; 83(3):428-441.

  2. Qi, J+., and Shi, Y+. Selective targeting of different bromodomains by small molecules. Cancer Cell., 2020 Jun 8;37(6):764-766. doi: 10.1016/j.ccell.2020.05.016. +Co-correspondence.

  3. Jambhekar, A., Dhall, and Shi, Y. Roles and regulation of histone methylation in animal development. Nat. Rev. Mol. Cell Biol., 2019 Jul 2; epub ahead of print PMID 31267065

  4. Anastas, JN., and Shi, Y. Can the brain have “happy” chromatin? Mol. Cell, 2019; Vol 74(3): 418-20

  5. Murn, J., and Shi, Y. The winding path of protein methylation research: milestones and new frontiers. Nat. Rev. Mol. Cell Biol., 2017; Vol 18(8):517-527. PMID: 28512349.

  6. Jambhekar, A., Anastas, JN., and Shi, Y. Histone lysine demethylase inhibitors. Cold Spring Harb. Perspect. Med., 2017; 7(1). pii: a026484.

  7. Aranda, S., Shi, Y., and Di Croce, L. Chromatin and Epigenetics at the Forefront: Finding Clues among Peaks Mol. Cell Biol., 2016; Vol 36(19):2432-9.

  8. Laurent, B., and Shi, Y. Expression, purification and biochemical analysis of the LSD1/KDM1A histone demethylase. Methods Enzymol., 2016; Vol 573: 241-59. Epub 2016 Mar 4.

  9. Luo, G-Z., Blanco, M.A., Greer, E.L., He, C., and Shi, Y. N6-methyldeoxyadenosine: A new epigenetic mark in eukaryotes? Nat Rev Mol. Cell. Biol., 2015; Vol 12:705-10.

  10. Sendinc, E., Jambhekar, A., and Shi, Y. Remodeling your way out of cell cycle. Cell, 2015; Vol 162: 237-38.

  11. Lan F and Shi Y. Histone H3.3 and cancer: A potential reader connection. Proc. Natl. Acad. Sci. USA., 2015; Vol 112(22): 6814-9. 2014 Dec 1. pii: 201418996. [Epub ahead of print]

  12. Brookes, E. and Shi, Y. Disparate epigenetic mechanisms of human disease, Ann. Rev. Genet., 2014; Vol 48:237-68.

  13. Gozani, O. and Shi, Y. Histone methylation in chromatin signaling. Fundamentals of Chromatin, 2014; p 213-256.

  14. Greer, EL., and Shi, Y. What’s the Mtrr with your grandparents? Cell Metab., 2013; Vol 18(4):457-9.

  15. Badeaux AI, Shi Y. Chromatin as a platform and storage device for cellular signaling events. Nature Rev. Mol. Biol., 2013; Vol 14(4): 211-24.

  16. Chen S, Shi Y. Small molecules that inhibit a specific subfamily of histone demethylases: A new horizon for epigenetics medicine? Cell Res., 2013; Vol 23(3): 326-8

  17. Greer EL, Shi Y. Dynamic regulation of histone methylation in health, disease, and inheritance. Nat. Rev. Genet., 2012; Vol 13:343-357.

  18. Iwase S, Shi Y. Histone and DNA modifications in mental retardation. Prog. Drug Res., 2011; Vol 67: 147-73.

  19. Mosammaparast N, Shi Y. Reversal of histone methylation: Biochemical and molecular mechanisms of histone demethylases. Ann. Rev. Biochem., 2010; Vol 79:155-79. PMC exempt.

  20. Lan F, Shi Y. Epigenetic regulation: methylation of histones and non-histone proteins. Sci. China C. Life Sci., 2009; Vol 52:311-22.

  21. Nottke AC, Colaiacovo M, Shi Y. Developmental roles for the histone lysine demethylases. Development, 2009; Vol 136(6):879-89.

  22. Lan F, Nottke AC, Shi Y. Mechanisms involved in the regulation of histone lysine demethylases. Curr. Opin. Cell Biol., 2008; Vol 20:316-325.

  23. Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pilius L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y. New nomenclature for chromatin-modifying enzymes. Cell, 2007; Vol 131:633-636.

  24. Shi Y. "Histone Modification and Transcriptional Repression", in Carey, M. and Smale, S. (eds), Eukaryotic Gene Regulation: From Chromatin to Transcription to mRNA Processing, The Biomedical & Life Sciences Collection, Henry Stewart Talks Ltd, London, 2007 (online at http://www.hstalks.com/?t=BL0081015-Shi)

  25. Shi Y. Histone demethylases: emerging roles in development, physiology and disease. Nat. Rev. Genet., 2007; Vol 8:829-33.

  26. Shi Y. Taking epigenetics center stage. Cell, 2007; Vol 128: 639-40.

  27. Shi Y*, Whetstine J. Dynamic regulation of histone lysine methylation by demethylases. Mol. Cell, 2007; Vol 25:1-14. *Corresponding author.

  28. Shi YJ, Shi Y. CtBP co-repressor complex: A multi-enzyme machinery that coordinates chromatin modifications. pp77-80, CtBP Family of Proteins (edited by G. Chinnadurai). 2006, Landers Biosciences.

  29. Sui GC, Shi Y, Gene silencing by a DNA vector-based RNAi technology. Methods in Mol Biol., 2005; Vol 309:205-218 (edited by Gordon Carmichael) Humana Press.

  30. Liu HF, Shi Y. “Yin Yang 1” chapter in Zinc Finger Proteins: from Atomic Contact to Cellular Function. 2005; pp 182-193. (Edited by Shiro Iuchi and Natalie Kuldell), Landers Biosciences and Kluwer Academic Press.

  31. Shi YJ, Shi Y. Metabolic enzymes in transcription-a direct link between metabolism and regulated gene expression? Trends in Genetics, 2004; Vol 20:445-52.

  32. Shi Y*, Blackwell TK. A two-tiered transcription regulation mechanism that protects germline identity: lessons from the worms. Mol. Cell, 2003; Vol 12:1062-64.*Corresponding author.

  33. Wall N, Shi Y. The power of small RNA: can RNA interference be effectively exploited for therapy? The Lancet, 2003; Vol 362: 1401-3.

  34. Shi Y. Mammalian RNAi for the masses. Trends in Genetics, 2003; Vol 19: 9-12 (#1 downloaded article among all of Elsevier publications in 2003).

  35. Johnstone RW, Shi Y. The Wilms Tumor Suppressor WT1: one gene, many proteins and functions? Encyclopedia of Cancer (2nd edition), 2002. Edited by Bertino et al. PP 543-551. Academic Press, San Diego.

  36. Shi Y, Lee JS, Galvin KM. Everything you have ever wanted to know about Yin Yang BBA Reviews on Cancer, 1997; 1332: F25-F48.